TY - JOUR
T1 - Species delimitation of three species within the Russula subgenus Compacta in Korea : R. eccentrica, R. nigricans, and R. subnigricans
AU - PARK, Myung Soo
AU - LEE, Hyun
AU - OH, Seung Yoon
AU - JUNG, Paul Eunil
AU - SEOK, Soon Ja
AU - FONG, Jonathan, Julio
AU - LIM, Young Woon
PY - 2014/8
Y1 - 2014/8
N2 - Distinguishing individual Russula species can be very difficult due to extensive phenotypic plasticity and obscure morphological and anatomical discontinuities. In this study, we use the internal transcribed spacer (ITS) and 28S nuclear ribosomal large subunit (LSU) markers to identify and study the genetic diversity of species in the Russula subgenus Compacta in Korea. We focus on two morphologically similar species that are often misidentified for each other: R. nigricans and R. subnigricans . Based on molecular phylogenetic analyses, we identify three subgroups of R. nigricans , with two from Asia and one from Europe/North America. Surprisingly, we find Korean R. subnigricans are more closely related to R. eccentrica from North America than the type specimen of R. subnigricans from Japan. These molecular data, along with habitat data, reveal that Korean R. subnigricans had previously been misclassified and should now be recognized as R. eccentrica . Both ITS and LSU exhibit high interspecific and low intraspecific variation for R. eccentrica , R. nigricans , and R. subnigricans . These markers provide enough resolutional power to differentiate these species and uncover phylogeographic structure, and will be powerful tools for future ecological studies of Russula .
AB - Distinguishing individual Russula species can be very difficult due to extensive phenotypic plasticity and obscure morphological and anatomical discontinuities. In this study, we use the internal transcribed spacer (ITS) and 28S nuclear ribosomal large subunit (LSU) markers to identify and study the genetic diversity of species in the Russula subgenus Compacta in Korea. We focus on two morphologically similar species that are often misidentified for each other: R. nigricans and R. subnigricans . Based on molecular phylogenetic analyses, we identify three subgroups of R. nigricans , with two from Asia and one from Europe/North America. Surprisingly, we find Korean R. subnigricans are more closely related to R. eccentrica from North America than the type specimen of R. subnigricans from Japan. These molecular data, along with habitat data, reveal that Korean R. subnigricans had previously been misclassified and should now be recognized as R. eccentrica . Both ITS and LSU exhibit high interspecific and low intraspecific variation for R. eccentrica , R. nigricans , and R. subnigricans . These markers provide enough resolutional power to differentiate these species and uncover phylogeographic structure, and will be powerful tools for future ecological studies of Russula .
KW - DNA barcoding
KW - Internal Transcribed Spacer
KW - 28S Nuclear Ribosomal Large Subunit
KW - Russula eccentrica
KW - Russula subnigricans
KW - Russula nigricans
UR - http://commons.ln.edu.hk/sw_master/5037
UR - http://www.scopus.com/inward/record.url?scp=84940244813&partnerID=8YFLogxK
U2 - 10.1007/s12275-014-4168-z
DO - 10.1007/s12275-014-4168-z
M3 - Journal Article (refereed)
C2 - 24994012
SN - 1225-8873
VL - 52
SP - 631
EP - 638
JO - Journal of Microbiology
JF - Journal of Microbiology
IS - 8
ER -